What is it Like to Have Covid-19?

10 AM 22-MarCasesDeathsParishes
St Mary Parish10
Louisiana8372036
United States30,491390
World328,27514,366
Italy46,6385,476

UPDATE: AT 2 PM GOVERNOR EDWARDS ANNOUNCED A STAY HOME AND SHELTER IN PLACE ORDER FOR THE ENTIRE STATE BEGINNING AT 5 PM MONDAY, MARCH 23, IN AN EFFORT TO SLOW THE NUMBER OF COVID-19 CASES IN LOUISIANA. WE NOW LEAD THE WORLD IN THE GROWTH OF CASES. THIS IS NOT A TIME WE WANT TO BE NUMBER 1!!

I have concentrated in past on the virus itself and how it is spreading. Today I will look at the course of the disease itself. Before I start describing the evolution of the disease process, it needs to be understood that not everyone has the severe course we will discuss. In fact, as previously noted, some will not even know they have anything other than a mild cold or allergies. That said, no matter how dangerous the severity of the course of the disease, the person infected can spread the disease to anyone they come in contact with.

Most of those infected will either have been within 6-9 feet of someone infected or come in contact with virus particles on a surface. The virus particles make their way to the nose, mouth, and/or nose of the victim and are further transferred into the body and lungs via respiration and swallowing. Once in the body, the virus seeks out cells with ACE2 receptors. Then like a lock and key, the spike protein on the SARS CoV 2 virus attaches perfectly with an ACE2 receptor, allowing the strand of RNA in the virus to hijack the cell and begin reproducing more virus particles.

By the third day post contact, the virus is reproducing in such quantities that the body begins to shed thousands of virus particles with each breath. It is likely that saliva, tears, and possibly other bodily secretions also contain the virus. As the virus spreads throughout the body, the immune system senses an invasion by an outside organism and begins to mount an immune response. The myriad of antibodies in our body begin to see which ones might be able to attack the virus. Once antibodies begin to attach to the virus particles, the body begins to produce more of those specific antibodies. Within a few days, these antibodies can be detected in the body.

As the body cranks up its immune response, we begin to see the body try and fight off the virus. This is Day 1 of the illness. The body acts by raising the its temperature, fever, and trying to get rid of the invader by coughing. So the early symptoms are a dry cough, fever, headache, body aches, and fatigue, similar to when you have the seasonal flu. In about 80 % of cases, symptoms will get only slightly worse than the seasonal flu.

But in those cases involving elderly patients and those with other aggravating illnesses and compromised immune systems, things continue to worsen. Those 20% or so remaining victims will likely require hospitalization for their symptoms and distress. This normally occurs on about Day 7. The lungs are the primary target of the Covid-19 virus and as the virus works down the respiratory tract, we see the symptoms to evolve into case similar to bronchitis and eventually pneumonia.

Our lungs are made up of tiny air sacs known as alveoli. As the immune response battle moves to the lungs, the dry cough becomes a moist one. The alveoli come under attack by the virus and the virus is attacked by the immune system. This leads to an increase in secretions in the lungs and a thickening or swelling of the lining of the alveolar sacs, all of which leads to a build up of secretions in sections of the lungs, which causes a decrease in the capacity to process oxygen. Shortness of breath and a wet cough enter the symptom mix.

With less oxygen entering the system, organs such as the liver, kidneys and brain begin to work less efficiently and even fail. As more fluids build up in the lungs, consolidation, the blocking of entire sections of the lung by secretions, leads to expanding pneumonia. Things happen quicker now and by Day 8 a small percentage, about 5-7%, will develop acute respiratory distress syndrome (ARDS). They require intensive care and ventilator support to deliver more oxygen to the body.

Should the lungs be damaged too much, we see organ failure and death. This is the end game for those faced with serious ARDS cases of the Covid-19 virus. Unlike cases of pneumonia caused by bacteria, there are no antibiotics which can fight the Covid-19 virus. Antibiotics may be used to prevent bacterial pneumonia from forming as well but will have no impact on the virus itself. By Day 11 or 12, those with serious ARDS will normally succumb to the illness.

Those who survive past day 12 and go on to survive the illness will normally be feeling better by Day 17 and those hospitalized in the ICU are normally released after a little over two weeks. They will now have a natural immunity to the virus. We do not know how long this immunity lasts, but history tells us we should be good for a year or so, Hopefully long enough to see a vaccine enter the picture.

As always, Stay Home, and Stay Safe. Follow the instructions of federal, state and local officials. It will save lives!

St Mary Reports First Covid-19 Case

In its 5:30 PM update, the Louisiana Department of Public Health added St Mary Parish to the growing list of parishes with confirmed Covid-19 cases. There are now 763 cases in 35 parishes and 16 dead in Louisiana. More in tomorrow’s blog.

Stay Safe!

Looking at SARS CoV-2

Data as of 10 AM 21-March:

Covid 19 CasesCasesDeathsParishes
Louisiana5851629
St. Mary
World286,81611,837
United States19,775276
Italy47,0214,032

Today we will take at look at the SARS CoV 2 virus which is the causative agent of the Covid-19 outbreak. As scientists have more time to study the virus, since it has moved outside of China, information on it is growing.

First off, lets address the conspiracy theorists out there who claim the SARS CoV 2 virus is a product of Chinese or other military labs. Information released yesterday by the Scripps Research Institute shows the virus is of natural origin.

“By comparing the available genome sequence data for known coronavirus strains, we can firmly determine that SARS-CoV-2 originated through natural processes,” said Kristian Andersen, PhD, associate professor of immunology and microbiology at Scripps, and lead author on the paper, “The proximal origin of SARS-CoV-2,” . Anderson, along with coauthors Robert F. Garry, Tulane University; Edward Holmes, University of Sydney; Andrew Rambaut, University of Edinburgh; and W. Ian Lipkin, Columbia University say SARS CoV 2 show no evidence of being created in a laboratory or engineered in any form.

This is a computer generated image of the spike protein that acts as the key to unlock the human ACE2 receptor found on many human pulmonary cells. Courtesy: Cell Magazine

Evidence shows the SARS CoV 2 virus is a mingling in many ways of the SARS CoV virus and the MERS virus. The strongest evidence of natural evolution came from the receptor-binding domain of the SARS CoV 2 virus, which has evolved over time to very selectively bind to the human ACE2 receptor, found on many human cells including those in the respiratory system. The receptor-binding domain is also known as the SARS CoV 2 “spike protein.” The virus binds so well that scientists say it could only be the result of “natural selection.”

As to SARS CoV 2 itself, we are finally seeing some actual photos of the virus. All of the following come from electron microscope imagery:

Image of a single SARS CoV 2 virus from the Smorodintsev Research Institute of Influenza in Russia. Note the bar on the bottom which is equal to 200 nano meters (nm). For reference, there are 1 billion nano meters in one meter.
Transmission electron microscope image of SARS CoV 2 viruses, with their spike proteins, exiting a cell which the virus hijacked to reproduce itself. Courtesy: NIAID-RML
A group of SARS CoV 2 viruses, yellow, cluster on growth medium in this electron microscopic image. Courtesy: NIAID-RML

Thus, SARS-CoV-2 virus belongs to the genera of Beta Coronaviruses, in the order of Nidovirales, family of Coronaviridae and sub-family of Orthocoronavirinae. It is round or elliptical with a diameter of approximately 100 nm.

Here is an amazing graphic of the structure of the SARS CoV 2 virus from a recent article in the Economist.

As we can see, the virus is a very simple design. It is composed of a lipid membrane capsule, which surrounds a nucleocapsid protein that contains the RNA sequence of about 30,000 base pairs. On the outside of the capsule are the spike proteins, which so easily bind to the ACE2 receptors of human cells, especially those in the respiratory system.

It is amazing that something so small, so simple, and non-living, has in a matter of weeks brought the world to its knees. Yet, we are only in the infancy of this outbreak. How long it lasts, and we need to hope it is stretched out over months, and how severe the implications, lay with how well we as citizens can abide by the restrictions put in place.

The future of the outbreak, specifically how bad it gets, is in all of our hands. Hopefully, we have the resolve to recognize the common good above personal need and want and do what is asked. Because barring a vaccine, likely at least a year away, social distancing and isolation is the only answer.

Stay safe and follow the orders of federal, state and local health officials.

How Much Damage can One Person Do?

Here is the data update for Thursday, 19-March.

LocationCasesDeaths Parishes
Louisiana347817
United States9514141
World222,6429,106
Italy31,5062,978
St Mary Parish00

Today we will take a look at South Korea and the story of the now infamous “Patient 31.” As a relatively small country, both in land mass and population, South Korea has led the world in limiting the effects of the Covid-19 outbreak. They did this through a huge testing campaign, tracking of all of those who had been in contact with anyone known to be infected, and strong self-isolation policies to prevent spread. It is the tracking of how many people each infected person came in contact with, which provides the answer to the question posed above: “How much damage can one person do?”

The first eleven cases in South Korea were traced back to having come in contact with between two and one hundred people. A lot of exposure and many of those contacted became future cases but nothing out of the ordinary. Then came Patients 12 and 14, a married couple who came in contact with 425 people. The first major community spread. Patient 16 would be in contact with 450 people themselves, becoming the largest spreader of the disease to that point. Patients 17-30 would only be in contact with between 10 and 40 people each before they were isolated.

Then came Patient 31, a 61-year-old woman, who was to become the focus of her own major outbreak. It is not known when the woman was infected. However, we do know that on 2-Jan, she visited the C-Club in Seoul, South Korea, a club purportedly tied to the Shincheonji church. Seoul, a city of just under 10 million is in the northern part of the country. The Shincheonji Church of Jesus is a secretive sect that believes the churches founder Lee Man-hee is the returned Jesus Christ and Lee is the only person who can interpret the secret metaphors of the Bible. It has over 300,00 followers in South Korea.

On 6-Feb, Patient 31 was involved in a motor vehicle accident in the southern city of Daegu after visiting a C-Club there. Daegu is a city of 2.5 million in the North Gyeongsang Province. On 7-Feb, Patient 31 was hospitalized in Saeronan Oriental Medicine Hospital in Daegu. The following day, she traveled home and collected personal belongings before returning to the hospital.

On 9-Feb, Patient 31 left Saeronan Hospital of her own accord and attended two hours of services at Shincheonji Church of Jesus in Daegu, before returning to the hospital. She began running a fever on 10-Feb. On 15-Feb, doctors strongly suggested that she be tested for the SAR CoV-2 virus. She refused, instead taking a taxi from the hospital to the Queen Vell Hotel, where she had lunch with a friend or friends then took at taxi back to the hospital. The next day, she was again advised to be tested for the coronavirus but refused and again traveled from the hospital to two hours of services at Shincheonji Church of Jesus in Daegu. On leaving the services, she traveled to a local clinic where she was tested for SAR CoV-2, before returning to the hospital. At this point, she transferred to Daegu Medical Center where on 17-Feb she was notified she had tested positive, becoming Patient 31 in Korea.

In her wandering travels, Patient 31 came in contact with a known 1,160 persons and untold others. She brought the disease to two hospitals and a clinic, as well as Shincheonji Church of Jesus in Daegu. In the following days, Daegu and the Shincheonji Church of Jesus there would become the nexus for the spread of Covid-19 in South Korea

Courtesy Reuters

The map above shows the impact one person had on the outbreak in South Korea. Daegu is the large blue circle in southern Korea. Seoul with five times the population is one of the small circles in the north. One person can clearly make a difference and have a huge impact on outbreaks. Patient 31 surely did!

Stay safe. Self-isolate and follow the directives of state, local and federal officials.

Covid-19 Update

Covid-19 Update
3:00 PM 18-MarCasesDeathsParishes
Louisiana257713
St. Mary Parish00 
United States7,324108
Italy35,7132,978
World212,5948,726

Above are the numbers as of mid-afternoon on Wednesday. I will likely be blogging daily during the coming weeks tracking the progress of the outbreak and providing information from verifiable and peer-reviewed data and studies on the outbreak. I am including Italy in the update numbers because they unfortunately are about two weeks ahead of the rest of the western word in this outbreak. They are the best indication of how this will progress and an example of how bad things can get.

All indications are that we are at a critical inflection point in the US outbreak. How well we self-isolate and stay away from gatherings over the next two weeks will determine how devastating this outbreak will become. It seems completely illogical but we want this outbreak to drag on. A longer duration outbreak, with a slower rise in cases over months is far more palatable to the continued nearly vertical slope in the number of confirmed cases. If we do not “flatten the curve,” the number of those critically ill with Covid-19 will outstrip the number of critical care beds in Louisiana and the US as a whole. We could be put in the position Italy now fines itself, where they are literally having to decide who gets ventilators and ICU beds and who does not. Who dies and who does not. As the governor and president have said, how we act as a state and nation in the coming two weeks will determine just how bad things get.

The graph above says it all. If by self-isolating someone prevents one case of Covid-19 today, it will prevent 2,200 new cases in next 30 days. If we say “oh its not that bad” and wait a week before preventing that one case, we only prevent 500 new cases. A difference of say 700 cases. That is how fast this virus spreads!

We are all seeing the number of cases climb exponentially in Louisiana and across the US and world. But even those numbers are somewhat deceiving. Let’s look at Louisiana. We now have 257 confirmed cases. That is based on just under 600 people being tested in Louisiana. There are over 4 million people in Louisiana. Of those positive tests, 40% are in people under the age of 50. They were tested because they either were exposed or had symptoms. But, in that age demographic, most healthy people do not have serious symptoms from the virus and may not even know they have it. So imagine the number of people who likely have the virus in that age group but have no idea or are just treating their illness as a cold or the flu. Each person out there infected, unknowingly, will lead to 2200 new cases in 30 days. The impact is staggering.

We must also remember that Covid-19 has an incubation period of somewhere between 5 and 14 days. That means it could be a week or more between when you are infected and begin to show symptoms. But by the second or third day, your body begins to shed the virus to your surroundings. All the while, you are spreading the disease and do not even know it. And once you see the onset of symptoms, they will initially resemble a run of the mill upper respiratory infection possibly leading to even more people becoming infected pending testing. The bottom line is that those who acquire the virus are likely to spread it for up to 10 days before they are aware they are a threat. This is why Governor Edwards said today we must all assume we have the virus and do not know it, if we are to flatten the curve.

The graphic above is from the World Health Organization and shows the symptoms associated with Covid-19. For the most part, they are the same as any upper respiratory infection, bronchitis or pneumonia. If you have any of these symptoms, contact your health care provider, If you do not have a doctor, call 211 in Louisiana for a referral. Only be identifying and isolating those with the virus will we ever slow its growth.

I will close with another great graphic countering the sentiment still seen online that Covid-19 is no different than seasonal flu outbreaks.

This graphic clearly demonstrates the Covid-19 outbreak is twice as contagious as the flu, has an incubation period up to four times longer, is nine times more likely to lead to hospitalization and is up to 34 times more deadly. This is far worse than the seasonal flu! And by the way, the seasonal flu will affect 30 million in the US this year and kill around 20,000. And we have a vaccine for it.

Finally, there are stories all over the internet that ibuprofen may make a Covid-19 infection worse. This is baseless. The World Health Organization and US Centers for Disease Control and Prevention both said today that there is no scientific basis for this claim and ibuprofen is a perfectly reasonable alternative to acetaminophen, especially for those who cannot use Tylenol and other acetaminophen products.

Until next time, stay safe and flatten the curve by following the recommendations of state and federal officials.